STRINGSTRING
Noca_1874 protein (Nocardioides sp. JS614) - STRING interaction network
"Noca_1874" - Radical SAM domain-containing protein in Nocardioides sp. JS614
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Noca_1874Radical SAM domain-containing protein (241 aa)    
Predicted Functional Partners:
Noca_1873
Hypothetical protein (515 aa)
 
   
  0.975
hemE
Uroporphyrinogen decarboxylase; Catalyzes the decarboxylation of four acetate groups of uroporphyrinogen-III to yield coproporphyrinogen-III (345 aa)
       
  0.946
Noca_4031
Acetaldehyde dehydrogenase (511 aa)
 
   
  0.805
Noca_0724
Iron-containing alcohol dehydrogenase (418 aa)
 
   
  0.759
Noca_2954
Phosphate acetyltransferase; Involved in acetate metabolism (696 aa)
       
  0.649
Noca_1872
Hypothetical protein (86 aa)
              0.632
Noca_0339
Cyclic nucleotide-binding protein (225 aa)
     
  0.607
Noca_4626
Methylmalonate-semialdehyde dehydrogenase (498 aa)
       
  0.553
Noca_4598
Succinate semialdehyde dehydrogenase (485 aa)
       
  0.553
Noca_4493
Phenylacetic acid degradation protein paaN (557 aa)
       
  0.553
Your Current Organism:
Nocardioides sp. JS614
NCBI taxonomy Id: 196162
Other names: N. sp. JS614, Nocardioides, Nocardioides JS614, Nocardioides sp. JS614
Server load: low (10%) [HD]