STRINGSTRING
Noca_1890 protein (Nocardioides sp. JS614) - STRING interaction network
"Noca_1890" - Hypothetical protein in Nocardioides sp. JS614
Nodes:
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splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
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Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Noca_1890Hypothetical protein (318 aa)    
Predicted Functional Partners:
Noca_4330
Peptidoglycan binding domain-containing protein (485 aa)
   
          0.705
Noca_0013
Hypothetical protein (115 aa)
   
          0.689
Noca_2909
Secreted protein (153 aa)
   
          0.672
Noca_4321
ArsR family transcriptional regulator (200 aa)
   
          0.669
lepA
GTP-binding protein LepA; Required for accurate and efficient protein synthesis under certain stress conditions. May act as a fidelity factor of the translation reaction, by catalyzing a one-codon backward translocation of tRNAs on improperly translocated ribosomes. Back- translocation proceeds from a post-translocation (POST) complex to a pre-translocation (PRE) complex, thus giving elongation factor G a second chance to translocate the tRNAs correctly. Binds to ribosomes in a GTP-dependent manner (635 aa)
              0.655
Noca_1895
Hypothetical protein (228 aa)
 
          0.649
Noca_1892
Aminoglycoside/hydroxyurea antibiotic resistance kinase (303 aa)
              0.644
Noca_1893
MOSC domain-containing protein (218 aa)
              0.607
Noca_3585
Hypothetical protein (422 aa)
   
          0.597
Noca_2467
Hypothetical protein (266 aa)
   
          0.594
Your Current Organism:
Nocardioides sp. JS614
NCBI taxonomy Id: 196162
Other names: N. sp. JS614, Nocardioides, Nocardioides JS614, Nocardioides sp. JS614
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