STRINGSTRING
Noca_1938 protein (Nocardioides sp. JS614) - STRING interaction network
"Noca_1938" - Periplasmic component of the Tol biopolymer transport system-like in Nocardioides sp. JS614
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Noca_1938Periplasmic component of the Tol biopolymer transport system-like (593 aa)    
Predicted Functional Partners:
Noca_1939
Hypothetical protein (106 aa)
              0.715
Noca_1937
Periplasmic solute binding protein (311 aa)
              0.610
Noca_1936
ABC transporter-like protein (287 aa)
              0.610
Noca_1935
ABC-3 protein (337 aa)
              0.610
Noca_1934
Zinc uptake regulator (135 aa)
              0.610
glyQS
glycyl-tRNA synthetase; Catalyzes the attachment of glycine to tRNA(Gly) (471 aa)
              0.559
Noca_1941
Hypothetical protein (256 aa)
              0.551
Noca_1942
nifR3 family TIM-barrel protein; Catalyzes the synthesis of 5,6-dihydrouridine (D), a modified base found in the D-loop of most tRNAs, via the reduction of the C5-C6 double bond in target uridines (386 aa)
              0.465
Noca_3028
Hypothetical protein (133 aa)
   
          0.463
Noca_1415
Alanine racemase domain-containing protein (386 aa)
   
          0.426
Your Current Organism:
Nocardioides sp. JS614
NCBI taxonomy Id: 196162
Other names: N. sp. JS614, Nocardioides, Nocardioides JS614, Nocardioides sp. JS614
Server load: low (7%) [HD]