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Noca_1947 protein (Nocardioides sp. JS614) - STRING interaction network
"Noca_1947" - DNA primase in Nocardioides sp. JS614
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second shell of interactors
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proteins of unknown 3D structure
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some 3D structure is known or predicted
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Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
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[Homology]
Score
Noca_1947DNA primase (932 aa)    
Predicted Functional Partners:
Noca_4657
DnaB domain-containing protein; Participates in initiation and elongation during chromosome replication; it exhibits DNA-dependent ATPase activity (824 aa)
 
 
  0.968
Noca_1948
Hypothetical protein (173 aa)
              0.911
rph
Ribonuclease PH; Phosphorolytic exoribonuclease that removes nucleotide residues following the -CCA terminus of tRNA and adds nucleotides to the ends of RNA molecules by using nucleoside diphosphates as substrates (242 aa)
   
 
  0.883
sigA
RNA polymerase sigma factor; Sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released. This sigma factor is the primary sigma factor during exponential growth (495 aa)
 
 
  0.857
Noca_3050
DNA polymerase III subunit alpha (1183 aa)
 
 
  0.825
smpB
SsrA-binding protein; Required for rescue of stalled ribosomes mediated by trans-translation. Binds to transfer-messenger RNA (tmRNA), required for stable association of tmRNA with ribosomes. tmRNA and SmpB together mimic tRNA shape, replacing the anticodon stem-loop with SmpB. tmRNA is encoded by the ssrA gene; the 2 termini fold to resemble tRNA(Ala) and it encodes a ’tag peptide’, a short internal open reading frame. During trans-translation Ala- aminoacylated tmRNA acts like a tRNA, entering the A-site of stalled ribosomes, displacing the stalled mRNA. The ribosome then switches to [...] (159 aa)
 
   
  0.816
Noca_1946
D-isomer specific 2-hydroxyacid dehydrogenase (304 aa)
              0.790
trmD
tRNA (Guanine37-N1) methyltransferase; Specifically methylates guanosine-37 in various tRNAs (385 aa)
 
   
  0.789
Noca_2980
Sigma-70 region 3 domain-containing protein; Sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released (319 aa)
 
 
  0.773
nusG
Transcription termination/antitermination factor NusG; Participates in transcription elongation, termination and antitermination (317 aa)
 
 
  0.761
Your Current Organism:
Nocardioides sp. JS614
NCBI taxonomy Id: 196162
Other names: N. sp. JS614, Nocardioides, Nocardioides JS614, Nocardioides sp. JS614
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