STRINGSTRING
Noca_2057 protein (Nocardioides sp. JS614) - STRING interaction network
"Noca_2057" - Polysaccharide deacetylase in Nocardioides sp. JS614
Nodes:
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splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Noca_2057Polysaccharide deacetylase (252 aa)    
Predicted Functional Partners:
Noca_2058
Monogalactosyldiacylglycerol synthase (373 aa)
 
          0.922
Noca_3497
Glycosyl transferase family protein (496 aa)
 
   
  0.870
Noca_2056
Cation efflux protein (212 aa)
   
        0.867
Noca_2832
Cellulose synthase (669 aa)
   
   
  0.840
Noca_1338
Glycosyl transferase family protein (772 aa)
 
   
  0.840
Noca_0721
General secretion pathway protein E (606 aa)
   
   
  0.840
Noca_2059
Undecaprenyl-diphosphatase (204 aa)
   
        0.649
Noca_2065
Group 1 glycosyl transferase (750 aa)
 
     
  0.648
Noca_2060
Hypothetical protein (239 aa)
              0.632
Noca_4157
Putative glucosyl-3-phosphoglycerate synthase (299 aa)
 
   
  0.580
Your Current Organism:
Nocardioides sp. JS614
NCBI taxonomy Id: 196162
Other names: N. sp. JS614, Nocardioides, Nocardioides JS614, Nocardioides sp. JS614
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