STRINGSTRING
Noca_2090 protein (Nocardioides sp. JS614) - STRING interaction network
"Noca_2090" - Sigma-70 region 2 domain-containing protein in Nocardioides sp. JS614
Nodes:
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splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
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Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Noca_2090Sigma-70 region 2 domain-containing protein (187 aa)    
Predicted Functional Partners:
Noca_2088
FAD-dependent pyridine nucleotide-disulfide oxidoreductase (484 aa)
         
  0.861
Noca_2089
Hypothetical protein (92 aa)
              0.859
Noca_4499
Sigma-70 region 2 domain-containing protein (188 aa)
   
          0.776
Noca_1677
Hypothetical protein (239 aa)
     
 
  0.747
Noca_4593
RNA polymerase factor sigma-70 (365 aa)
   
          0.712
Noca_3587
Sigma-70 factor (170 aa)
   
          0.616
Noca_3765
Sigma-70 region 4 domain-containing protein (190 aa)
   
          0.601
Noca_2091
Transcriptional regulator (417 aa)
         
  0.583
rpoC
DNA-directed RNA polymerase subunit beta’; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates (1290 aa)
       
 
  0.536
lexA
LexA repressor; Represses a number of genes involved in the response to DNA damage (SOS response), including recA and lexA. In the presence of single-stranded DNA, RecA interacts with LexA causing an autocatalytic cleavage which disrupts the DNA-binding part of LexA, leading to derepression of the SOS regulon and eventually DNA repair (246 aa)
   
     
  0.508
Your Current Organism:
Nocardioides sp. JS614
NCBI taxonomy Id: 196162
Other names: N. sp. JS614, Nocardioides, Nocardioides JS614, Nocardioides sp. JS614
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