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Noca_2293 protein (Nocardioides sp. JS614) - STRING interaction network
"Noca_2293" - Phage integrase family protein in Nocardioides sp. JS614
Nodes:
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splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
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Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Noca_2293Phage integrase family protein (395 aa)    
Predicted Functional Partners:
Noca_2294
Hypothetical protein (91 aa)
              0.583
Noca_1106
Restriction modification system DNA specificity subunit (161 aa)
   
   
  0.569
Noca_1105
Restriction modification system DNA specificity subunit (225 aa)
   
   
  0.569
Noca_2292
Hypothetical protein (116 aa)
              0.519
truB
tRNA pseudouridine synthase B; Responsible for synthesis of pseudouridine from uracil- 55 in the psi GC loop of transfer RNAs (289 aa)
   
        0.466
Noca_3226
Binding-protein-dependent transport system inner membrane protein (289 aa)
     
        0.457
Noca_2397
histidyl-tRNA synthetase (451 aa)
     
      0.438
dnaA
Chromosomal replication initiator protein DnaA; Plays an important role in the initiation and regulation of chromosomal replication. Binds to the origin of replication; it binds specifically double-stranded DNA at a 9 bp consensus (dnaA box)- 5’-TTATC[CA]A[CA]A-3’. DnaA binds to ATP and to acidic phospholipids (528 aa)
     
   
  0.438
Noca_3006
DNA polymerase I (889 aa)
         
  0.430
rnhB
Ribonuclease HII; Endonuclease that specifically degrades the RNA of RNA- DNA hybrids (240 aa)
         
  0.415
Your Current Organism:
Nocardioides sp. JS614
NCBI taxonomy Id: 196162
Other names: N. sp. JS614, Nocardioides, Nocardioides JS614, Nocardioides sp. JS614
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