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Noca_2325 protein (Nocardioides sp. JS614) - STRING interaction network
"Noca_2325" - Helix-turn-helix domain-containing protein in Nocardioides sp. JS614
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Noca_2325Helix-turn-helix domain-containing protein (89 aa)    
Predicted Functional Partners:
Noca_2324
Competence/damage-inducible protein cinA (168 aa)
              0.816
Noca_2327
Hypothetical protein (70 aa)
              0.706
Noca_2326
Hypothetical protein (84 aa)
              0.706
Noca_2852
Hypothetical protein (311 aa)
   
          0.660
Noca_3299
Regulatory proteins IclR (240 aa)
   
          0.649
Noca_2669
Hypothetical protein; Binds to RNA polymerase (RNAP), stimulating transcription from principal, but not alternative sigma factor promoters (128 aa)
   
        0.640
Noca_2394
Hypothetical protein (409 aa)
   
        0.631
Noca_2323
Glycoside hydrolase 15-like protein (589 aa)
              0.573
rpoZ
DNA-directed RNA polymerase subunit omega; Promotes RNA polymerase assembly. Latches the N- and C- terminal regions of the beta’ subunit thereby facilitating its interaction with the beta and alpha subunits (110 aa)
   
          0.542
Noca_0930
Hypothetical protein (168 aa)
   
          0.522
Your Current Organism:
Nocardioides sp. JS614
NCBI taxonomy Id: 196162
Other names: N. sp. JS614, Nocardioides, Nocardioides JS614, Nocardioides sp. JS614
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