STRINGSTRING
Noca_2400 protein (Nocardioides sp. JS614) - STRING interaction network
"Noca_2400" - Extracellular solute-binding protein in Nocardioides sp. JS614
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Noca_2400Extracellular solute-binding protein (599 aa)    
Predicted Functional Partners:
Noca_2399
Binding-protein-dependent transport system inner membrane protein (336 aa)
 
          0.944
Noca_2401
Binding-protein-dependent transport systems inner membrane component (338 aa)
 
          0.916
Noca_2402
Oligopeptide/dipeptide ABC transporter ATPase (347 aa)
 
          0.897
Noca_2403
Oligopeptide/dipeptide ABC transporter ATPase (425 aa)
 
          0.885
Noca_0914
Hypothetical protein (150 aa)
   
          0.711
Noca_3966
Major facilitator transporter (1075 aa)
   
          0.662
Noca_4090
Oligopeptide/dipeptide ABC transporter ATPase (358 aa)
 
          0.597
Noca_4346
Helix-turn-helix, type 11 domain-containing protein (330 aa)
   
          0.586
Noca_2806
ABC transporter-like protein (1185 aa)
   
          0.574
Noca_4093
Binding-protein-dependent transport systems inner membrane component (321 aa)
 
          0.550
Your Current Organism:
Nocardioides sp. JS614
NCBI taxonomy Id: 196162
Other names: N. sp. JS614, Nocardioides, Nocardioides JS614, Nocardioides sp. JS614
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