STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Noca_2492KEGG: pac:PPA0096 hypothetical protein. (96 aa)    
Predicted Functional Partners:
Noca_0824
PFAM: protein of unknown function DUF1271; KEGG: mac:MA1680 hypothetical protein.
 
  
 0.815
Noca_4568
PFAM: CsbD family protein; KEGG: rha:RHA1_ro04155 hypothetical protein; Belongs to the UPF0337 (CsbD) family.
 
    0.609
Noca_2491
PFAM: glycoside hydrolase, family 26; KEGG: bfs:BF0771 putative mannosidase; Belongs to the glycosyl hydrolase 26 family.
       0.567
Noca_2302
PFAM: dihydrodipicolinate reductase; NAD-dependent epimerase/dehydratase; domain of unknown function DUF1731; KEGG: nfa:nfa16890 putative epimerase.
  
    0.524
Noca_2182
PFAM: NmrA family protein; KEGG: ret:RHE_PC00048 hypothetical protein.
  
    0.508
Noca_2191
NmrA family protein; PFAM: 3-beta hydroxysteroid dehydrogenase/isomerase; NmrA family protein; KEGG: ret:RHE_PC00048 hypothetical protein.
  
    0.508
Noca_2497
PFAM: RNA-binding S4 domain protein; pseudouridine synthase; KEGG: pac:PPA1385 ribosomal large subunit pseudouridine synthase B; Belongs to the pseudouridine synthase RsuA family.
       0.456
Noca_2493
PFAM: Cobyrinic acid a,c-diamide synthase; KEGG: sma:SAV6508 partitioning or sporulation protein.
  
    0.449
Noca_2494
KEGG: sma:SAV6509 hypothetical protein.
       0.442
Noca_2495
Condensin subunit ScpA; Participates in chromosomal partition during cell division. May act via the formation of a condensin-like complex containing Smc and ScpB that pull DNA away from mid-cell into both cell halves.
       0.442
Your Current Organism:
Nocardioides sp. JS614
NCBI taxonomy Id: 196162
Other names: N. sp. JS614
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