STRINGSTRING
Noca_2558 protein (Nocardioides sp. JS614) - STRING interaction network
"Noca_2558" - Transcriptional regulator TrmB in Nocardioides sp. JS614
Nodes:
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splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Noca_2558Transcriptional regulator TrmB (156 aa)    
Predicted Functional Partners:
Noca_2560
Putative ABC transporter (523 aa)
 
          0.889
Noca_2559
ABC transporter-like protein (309 aa)
 
          0.877
Noca_2211
ABC transporter-like protein (312 aa)
 
          0.668
Noca_2212
Putative ABC antibiotics transporter (528 aa)
 
          0.665
Noca_1666
Putative ABC antibiotics transporter (548 aa)
 
          0.653
Noca_1665
ABC transporter-like protein (316 aa)
 
          0.649
Noca_2561
Hypothetical protein (302 aa)
              0.639
Noca_3710
Exopolysaccharide biosynthesis protein-like (420 aa)
   
          0.576
Noca_2333
Hypothetical protein (420 aa)
   
          0.569
Noca_0882
ABC transporter-like protein (574 aa)
   
          0.549
Your Current Organism:
Nocardioides sp. JS614
NCBI taxonomy Id: 196162
Other names: N. sp. JS614, Nocardioides, Nocardioides JS614, Nocardioides sp. JS614
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