STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Noca_2585PFAM: short-chain dehydrogenase/reductase SDR; KR; KEGG: sma:SAV6727 short chain dehydrogenase. (259 aa)    
Predicted Functional Partners:
Noca_2781
PFAM: MaoC domain protein dehydratase; KEGG: rha:RHA1_ro04531 2-enoyl acyl-CoA hydratase.
 
 0.901
Noca_2587
PFAM: glutamine synthetase, catalytic region; KEGG: rxy:Rxyl_3196 glutamate--ammonia ligase.
 
 
 0.889
Noca_2584
Peptidase C26; PFAM: glutamine amidotransferase class-I; peptidase C26; KEGG: mle:ML1573 possible amidotransferase.
 
     0.862
Noca_2586
PFAM: aldehyde dehydrogenase; KEGG: mmc:Mmcs_2059 betaine-aldehyde dehydrogenase; Belongs to the aldehyde dehydrogenase family.
 
 
 0.839
Noca_2588
Transcriptional regulator, GntR family; PFAM: regulatory protein GntR, HTH; GntR domain protein; Helix-turn-helix, type 11 domain protein; KEGG: sma:SAV6724 GntR-family transcriptional regulator.
 
  
 0.799
Noca_2583
PFAM: glycerophosphoryl diester phosphodiesterase; KEGG: cya:CYA_0909 glycerophosphoryl diester phosphodiesterase family protein.
     
 0.726
Noca_2582
KEGG: rha:RHA1_ro06611 hypothetical protein.
       0.723
Noca_4089
PFAM: short-chain dehydrogenase/reductase SDR; KR; KEGG: sco:SCO2490 dehydrogenase (secreted protein).
 
  
 0.712
Noca_2741
PFAM: short-chain dehydrogenase/reductase SDR; KR; KEGG: rha:RHA1_ro04654 3-oxoacyl-[acyl-carrier-protein] reductase; Belongs to the short-chain dehydrogenases/reductases (SDR) family.
 
    
0.631
Noca_2589
Amino acid/polyamine/organocation transporter, APC superfamily; PFAM: amino acid permease-associated region; KEGG: sco:SCO4097 amino acid/metabolite permease; TC 2.A.3.
 
 
 
 0.607
Your Current Organism:
Nocardioides sp. JS614
NCBI taxonomy Id: 196162
Other names: N. sp. JS614
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