STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Noca_2735PFAM: helix-turn-helix domain protein; KEGG: sco:SCO7279 DNA-binding protein. (104 aa)    
Predicted Functional Partners:
Noca_2733
KEGG: mmc:Mmcs_4635 lipid-transfer protein.
       0.723
Noca_2734
PFAM: peptidase M22, glycoprotease; KEGG: nfa:nfa5210 putative lipid-transfer protein.
       0.723
Noca_2732
PFAM: protein of unknown function DUF35; KEGG: nfa:nfa5230 hypothetical protein.
       0.664
rbpA-2
Conserved hypothetical protein; Binds to RNA polymerase (RNAP), stimulating transcription from principal, but not alternative sigma factor promoters.
  
    0.584
Noca_2710
SMART: regulatory protein, MerR; KEGG: pac:PPA1087 predicted transcriptional regulator.
  
  
 0.575
whiB-4
Transcription factor WhiB; Acts as a transcriptional regulator. Probably redox- responsive. The apo- but not holo-form probably binds DNA.
  
   
 0.525
Noca_2911
KEGG: sma:SAV2403 hypothetical protein.
  
     0.518
Noca_1981
KEGG: fra:Francci3_3166 tetratricopeptide TPR_2.
  
   
 0.513
Noca_2731
PFAM: luciferase family protein; KEGG: rha:RHA1_ro04686 probable 5,10-methylenetetrahydromethanopterin reductase.
       0.485
whiB-2
Transcription factor WhiB; Acts as a transcriptional regulator. Probably redox- responsive. The apo- but not holo-form probably binds DNA.
  
     0.477
Your Current Organism:
Nocardioides sp. JS614
NCBI taxonomy Id: 196162
Other names: N. sp. JS614
Server load: medium (42%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.