STRINGSTRING
Noca_2742 protein (Nocardioides sp. JS614) - STRING interaction network
"Noca_2742" - Short chain dehydrogenase in Nocardioides sp. JS614
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Noca_2742Short chain dehydrogenase (252 aa)    
Predicted Functional Partners:
Noca_2741
Short chain dehydrogenase (293 aa)
 
     
0.937
Noca_2744
Coenzyme A transferase (293 aa)
 
        0.935
Noca_2745
Putative CoA transferase subunit beta (256 aa)
 
        0.934
Noca_2743
enoyl-CoA hydratase (259 aa)
 
     
  0.922
Noca_4120
Short-chain dehydrogenase/reductase SDR (310 aa)
 
        0.860
Noca_2746
2-nitropropane dioxygenase (362 aa)
 
        0.837
Noca_2787
Dehydratase (126 aa)
 
          0.777
Noca_3561
Short chain dehydrogenase (276 aa)
 
          0.768
Noca_2789
Hypothetical protein (177 aa)
 
          0.749
Noca_2769
acyl-CoA dehydrogenase domain-containing protein (393 aa)
   
        0.707
Your Current Organism:
Nocardioides sp. JS614
NCBI taxonomy Id: 196162
Other names: N. sp. JS614, Nocardioides, Nocardioides JS614, Nocardioides sp. JS614
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