STRINGSTRING
Noca_2856 protein (Nocardioides sp. JS614) - STRING interaction network
"Noca_2856" - DNA primase-like protein in Nocardioides sp. JS614
Nodes:
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splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
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Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Noca_2856DNA primase-like protein (455 aa)    
Predicted Functional Partners:
Noca_1235
ATP dependent DNA ligase (311 aa)
 
  0.993
Noca_2271
ATP dependent DNA ligase (318 aa)
 
 
  0.907
Noca_0907
ATP-dependent DNA ligase (366 aa)
 
 
  0.905
ku
DNA end-binding protein Ku; With LigD forms a non-homologous end joining (NHEJ) DNA repair enzyme, which repairs dsDNA breaks with reduced fidelity. Binds linear dsDNA with 5’- and 3’- overhangs but not closed circular dsDNA nor ssDNA. Recruits and stimulates the ligase activity of LigD (331 aa)
 
   
  0.880
Noca_2857
Amino acid permease-associated protein (504 aa)
              0.859
Noca_1237
ATP dependent DNA ligase (304 aa)
   
   
 
0.843
lig
ATP-dependent DNA ligase; DNA ligase that seals nicks in double-stranded DNA during DNA replication, DNA recombination and DNA repair (509 aa)
 
 
  0.821
dxs
1-deoxy-D-xylulose-5-phosphate synthase; Catalyzes the acyloin condensation reaction between C atoms 2 and 3 of pyruvate and glyceraldehyde 3-phosphate to yield 1-deoxy-D-xylulose-5-phosphate (DXP) (634 aa)
              0.706
Noca_2858
Hypothetical protein (402 aa)
              0.706
Noca_2860
Strictosidine synthase (307 aa)
              0.661
Your Current Organism:
Nocardioides sp. JS614
NCBI taxonomy Id: 196162
Other names: N. sp. JS614, Nocardioides, Nocardioides JS614, Nocardioides sp. JS614
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