STRINGSTRING
Noca_2903 protein (Nocardioides sp. JS614) - STRING interaction network
"Noca_2903" - TrkA domain-containing protein in Nocardioides sp. JS614
Nodes:
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splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Noca_2903TrkA domain-containing protein (220 aa)    
Predicted Functional Partners:
Noca_2904
TrkA domain-containing protein (223 aa)
 
       
0.911
Noca_2902
Putative transporter (685 aa)
 
     
  0.894
Noca_2901
Deoxyribonuclease (413 aa)
   
        0.792
Noca_3184
PTS system fructose subfamily transporter subunit IIC (682 aa)
       
 
  0.723
Noca_2906
OB-fold, tRNA/helicase-type nucleic acid binding protein (120 aa)
 
          0.626
Noca_2443
Fmu (Sun) domain-containing protein (472 aa)
   
        0.556
Noca_3753
23S rRNA methyluridine methyltransferase (379 aa)
 
        0.536
dxs
1-deoxy-D-xylulose-5-phosphate synthase; Catalyzes the acyloin condensation reaction between C atoms 2 and 3 of pyruvate and glyceraldehyde 3-phosphate to yield 1-deoxy-D-xylulose-5-phosphate (DXP) (634 aa)
 
        0.511
Noca_2900
Hypothetical protein (257 aa)
              0.511
Noca_2899
Hypothetical protein (240 aa)
              0.511
Your Current Organism:
Nocardioides sp. JS614
NCBI taxonomy Id: 196162
Other names: N. sp. JS614, Nocardioides, Nocardioides JS614, Nocardioides sp. JS614
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