STRINGSTRING
Noca_2916 protein (Nocardioides sp. JS614) - STRING interaction network
"Noca_2916" - DNA-binding protein in Nocardioides sp. JS614
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Noca_2916DNA-binding protein (318 aa)    
Predicted Functional Partners:
Noca_2911
Hypothetical protein (96 aa)
 
          0.815
Noca_2669
Hypothetical protein; Binds to RNA polymerase (RNAP), stimulating transcription from principal, but not alternative sigma factor promoters (128 aa)
   
          0.743
Noca_2917
Short chain dehydrogenase (665 aa)
              0.681
Noca_2915
Hypothetical protein (211 aa)
              0.666
Noca_3055
DivIVA family protein (247 aa)
   
        0.628
Noca_1984
Hypothetical protein (172 aa)
   
          0.624
Noca_4187
Hypothetical protein (97 aa)
   
          0.585
Noca_2534
Electron transport protein; Binds to RNA polymerase (RNAP), stimulating transcription from principal, but not alternative sigma factor promoters (119 aa)
   
          0.566
Noca_2298
Hypothetical protein (238 aa)
   
          0.559
Noca_1726
Peptidase S24, S26A and S26B (113 aa)
   
          0.545
Your Current Organism:
Nocardioides sp. JS614
NCBI taxonomy Id: 196162
Other names: N. sp. JS614, Nocardioides, Nocardioides JS614, Nocardioides sp. JS614
Server load: low (12%) [HD]