STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Noca_2934Formate dehydrogenase; PFAM: molybdopterin oxidoreductase; molydopterin dinucleotide-binding region; molybdopterin oxidoreductase Fe4S4 region; KEGG: rha:RHA1_ro11225 hypothetical protein; Belongs to the prokaryotic molybdopterin-containing oxidoreductase family. (953 aa)    
Predicted Functional Partners:
Noca_2933
PFAM: 4Fe-4S ferredoxin, iron-sulfur binding domain protein; Polysulphide reductase, NrfD; KEGG: rha:RHA1_ro11226 probable polysulphide reductase.
 
 
 0.997
Noca_2932
PFAM: SirA family protein; KEGG: rha:RHA1_ro11227 hypothetical protein; Belongs to the sulfur carrier protein TusA family.
     
 0.797
tuf
Translation elongation factor 1A (EF-1A/EF-Tu); This protein promotes the GTP-dependent binding of aminoacyl- tRNA to the A-site of ribosomes during protein biosynthesis.
   
 
 0.796
Noca_2936
PFAM: Sulfate transporter/antisigma-factor antagonist STAS; sulphate transporter; KEGG: aeh:Mlg_1668 sulfate transporter.
     
 0.787
Noca_2935
Protein of unknown function DUF59; Binds and transfers iron-sulfur (Fe-S) clusters to target apoproteins. Can hydrolyze ATP; Belongs to the Mrp/NBP35 ATP-binding proteins family.
       0.780
Noca_3135
Menaquinol-cytochrome c reductase cytochrome c1 subunit precursor; PFAM: cytochrome c, class I; KEGG: sco:SCO2150 cytochrome C heme-binding subunit.
  
 
 0.766
Noca_3022
PFAM: glutamine amidotransferase, class-II; glutamate synthase, alpha subunit domain protein; ferredoxin-dependent glutamate synthase; glutamate synthase; KEGG: sco:SCO2026 putative glutamate synthase large subunit.
  
 
 0.722
Noca_2931
KEGG: rha:RHA1_ro11228 possible NADH dehydrogenase.
       0.675
Noca_2930
PFAM: beta-lactamase domain protein; SMART: Rhodanese domain protein; KEGG: rha:RHA1_ro11229 possible hydroxyacylglutathione hydrolase.
 
   
 0.592
Noca_1335
PFAM: Rieske [2Fe-2S] domain protein; FAD dependent oxidoreductase; KEGG: mpa:MAP1672 hypothetical protein.
  
 
 0.504
Your Current Organism:
Nocardioides sp. JS614
NCBI taxonomy Id: 196162
Other names: N. sp. JS614
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