STRINGSTRING
Noca_2988 protein (Nocardioides sp. JS614) - STRING interaction network
"Noca_2988" - Transcriptional regulator in Nocardioides sp. JS614
Nodes:
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splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Noca_2988Transcriptional regulator (314 aa)    
Predicted Functional Partners:
Noca_1507
ThiJ/PfpI domain-containing protein (191 aa)
 
          0.660
Noca_4383
AraC family transcriptional regulator (332 aa)
   
          0.604
lysS
lysyl-tRNA synthetase (516 aa)
       
      0.592
Noca_4218
Type 11 methyltransferase (261 aa)
   
          0.473
Noca_2989
30S ribosomal protein S1 (490 aa)
              0.452
Noca_2021
Binding-protein-dependent transport system inner membrane protein (522 aa)
   
          0.440
Noca_2022
Extracellular solute-binding protein (333 aa)
   
        0.438
Noca_3207
Isochorismatase hydrolase (250 aa)
              0.408
Noca_1301
Isochorismatase hydrolase (194 aa)
              0.408
Noca_0201
Isochorismatase hydrolase (198 aa)
              0.408
Your Current Organism:
Nocardioides sp. JS614
NCBI taxonomy Id: 196162
Other names: N. sp. JS614, Nocardioides, Nocardioides JS614, Nocardioides sp. JS614
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