STRINGSTRING
Noca_3028 protein (Nocardioides sp. JS614) - STRING interaction network
"Noca_3028" - Hypothetical protein in Nocardioides sp. JS614
Nodes:
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splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
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Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Noca_3028Hypothetical protein (133 aa)    
Predicted Functional Partners:
Noca_1216
Hypothetical protein (442 aa)
   
          0.662
trpC
Indole-3-glycerol phosphate synthase (260 aa)
              0.619
trpB
Tryptophan synthase subunit beta; The beta subunit is responsible for the synthesis of L- tryptophan from indole and L-serine (426 aa)
              0.608
trpA
Tryptophan synthase subunit alpha; The alpha subunit is responsible for the aldol cleavage of indoleglycerol phosphate to indole and glyceraldehyde 3- phosphate (274 aa)
              0.608
Noca_3024
Electron transport protein SCO1/SenC (210 aa)
              0.608
lgt
Prolipoprotein diacylglyceryl transferase; Transfers the N-acyl diglyceride group on what will become the N-terminal cysteine of membrane lipoproteins (314 aa)
              0.608
Noca_4391
Hypothetical protein (188 aa)
   
          0.579
Noca_4369
Hypothetical protein (146 aa)
   
          0.524
Noca_0962
Hypothetical protein (248 aa)
   
          0.501
Noca_1152
Hypothetical protein (310 aa)
   
          0.486
Your Current Organism:
Nocardioides sp. JS614
NCBI taxonomy Id: 196162
Other names: N. sp. JS614, Nocardioides, Nocardioides JS614, Nocardioides sp. JS614
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