STRINGSTRING
Noca_3153 protein (Nocardioides sp. JS614) - STRING interaction network
"Noca_3153" - Integral membrane protein in Nocardioides sp. JS614
Nodes:
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splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Noca_3153Integral membrane protein (194 aa)    
Predicted Functional Partners:
Noca_3152
PspA/IM30 family protein (260 aa)
 
     
  0.786
Noca_1290
Hypothetical protein (107 aa)
   
          0.765
Noca_2298
Hypothetical protein (238 aa)
 
          0.720
Noca_1411
Transcription factor WhiB; Acts as a transcriptional regulator. Probably redox- responsive. The apo- but not holo-form probably binds DNA (84 aa)
   
          0.709
Noca_0934
Hypothetical protein (88 aa)
   
          0.678
Noca_0503
ResB family protein (532 aa)
   
          0.642
rpoZ
DNA-directed RNA polymerase subunit omega; Promotes RNA polymerase assembly. Latches the N- and C- terminal regions of the beta’ subunit thereby facilitating its interaction with the beta and alpha subunits (110 aa)
   
          0.639
Noca_1713
Transcription factor WhiB; Acts as a transcriptional regulator. Probably redox- responsive. The apo- but not holo-form probably binds DNA (83 aa)
   
          0.635
Noca_4320
Hypothetical protein (119 aa)
   
          0.618
Noca_3150
Hypothetical protein (192 aa)
 
          0.605
Your Current Organism:
Nocardioides sp. JS614
NCBI taxonomy Id: 196162
Other names: N. sp. JS614, Nocardioides, Nocardioides JS614, Nocardioides sp. JS614
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