STRINGSTRING
Noca_3163 protein (Nocardioides sp. JS614) - STRING interaction network
"Noca_3163" - Branched-chain amino acid transport in Nocardioides sp. JS614
Nodes:
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splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
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Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Noca_3163Branched-chain amino acid transport (100 aa)    
Predicted Functional Partners:
Noca_3162
AzlC family protein (236 aa)
 
          0.964
Noca_3161
Hypothetical protein (72 aa)
              0.775
Noca_1428
Acyltransferase 3 (387 aa)
   
          0.648
Noca_3160
N-acetyltransferase GCN5 (185 aa)
 
          0.637
Noca_0366
Type II secretion system protein (240 aa)
   
          0.577
Noca_3159
phenylacetate-CoA oxygenase subunit PaaA (306 aa)
              0.453
Noca_3158
phenylacetate-CoA oxygenase subunit PaaB (93 aa)
              0.453
Noca_3157
phenylacetate-CoA oxygenase subunit PaaI (247 aa)
              0.453
Noca_3156
phenylacetate-CoA oxygenase subunit PaaJ (161 aa)
              0.453
Noca_2674
Hypothetical protein (565 aa)
   
          0.449
Your Current Organism:
Nocardioides sp. JS614
NCBI taxonomy Id: 196162
Other names: N. sp. JS614, Nocardioides, Nocardioides JS614, Nocardioides sp. JS614
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