STRINGSTRING
Noca_3248 protein (Nocardioides sp. JS614) - STRING interaction network
"Noca_3248" - Hypothetical protein in Nocardioides sp. JS614
Nodes:
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splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Noca_3248Hypothetical protein (124 aa)    
Predicted Functional Partners:
Noca_3247
Mg chelatase subunit ChlI (528 aa)
 
        0.958
Noca_3246
DNA protecting protein DprA (378 aa)
 
        0.940
xerC
Phage integrase family protein (312 aa)
              0.851
Noca_3249
Major facilitator transporter (385 aa)
              0.598
Noca_2268
DNA protecting protein DprA (349 aa)
 
        0.538
Noca_3259
Hypothetical protein (80 aa)
 
          0.492
rnhB
Ribonuclease HII; Endonuclease that specifically degrades the RNA of RNA- DNA hybrids (240 aa)
   
      0.484
rsmI
uroporphyrin-III C/tetrapyrrole methyltransferase; Catalyzes the 2’-O-methylation of the ribose of cytidine 1402 (C1402) in 16S rRNA (280 aa)
   
        0.479
Noca_4297
Short-chain dehydrogenase/reductase SDR (246 aa)
       
    0.461
Noca_4198
Short-chain dehydrogenase/reductase SDR (263 aa)
       
    0.461
Your Current Organism:
Nocardioides sp. JS614
NCBI taxonomy Id: 196162
Other names: N. sp. JS614, Nocardioides, Nocardioides JS614, Nocardioides sp. JS614
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