STRINGSTRING
Noca_3340 protein (Nocardioides sp. JS614) - STRING interaction network
"Noca_3340" - Hypothetical protein in Nocardioides sp. JS614
Nodes:
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splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Noca_3340Hypothetical protein (303 aa)    
Predicted Functional Partners:
Noca_3339
MOSC domain-containing protein (200 aa)
              0.658
Noca_3337
5-carboxymethyl-2-hydroxymuconate delta-isomerase (269 aa)
              0.655
Noca_0348
Hypothetical protein (120 aa)
   
          0.611
Noca_3704
Hypothetical protein (366 aa)
   
          0.605
Noca_2490
DEAD/DEAH box helicase (865 aa)
 
          0.575
Noca_3370
Type 12 methyltransferase (200 aa)
   
          0.557
Noca_3348
TetR family transcriptional regulator (185 aa)
   
          0.519
Noca_3338
Peptidase S45, penicillin amidase (789 aa)
              0.512
Noca_2305
Hypothetical protein (149 aa)
   
          0.512
gltX
glutamyl-tRNA synthetase; Catalyzes the attachment of glutamate to tRNA(Glu) in a two-step reaction- glutamate is first activated by ATP to form Glu-AMP and then transferred to the acceptor end of tRNA(Glu) (491 aa)
              0.502
Your Current Organism:
Nocardioides sp. JS614
NCBI taxonomy Id: 196162
Other names: N. sp. JS614, Nocardioides, Nocardioides JS614, Nocardioides sp. JS614
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