STRINGSTRING
Noca_3558 protein (Nocardioides sp. JS614) - STRING interaction network
"Noca_3558" - Endoglycoceramidase in Nocardioides sp. JS614
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Noca_3558Endoglycoceramidase (490 aa)    
Predicted Functional Partners:
Noca_3559
N-acetyltransferase GCN5 (218 aa)
              0.647
trpS
tryptophanyl-tRNA synthetase (352 aa)
              0.634
Noca_3556
2’,5’ RNA ligase (179 aa)
              0.621
Noca_3555
Hypothetical protein (616 aa)
              0.544
Noca_3554
Hypothetical protein (340 aa)
              0.544
Noca_3200
Phosphoesterase (380 aa)
   
          0.508
bioD
Dethiobiotin synthase; Catalyzes a mechanistically unusual reaction, the ATP- dependent insertion of CO2 between the N7 and N8 nitrogen atoms of 7,8-diaminopelargonic acid (DAPA) to form an ureido ring (281 aa)
   
          0.400
Your Current Organism:
Nocardioides sp. JS614
NCBI taxonomy Id: 196162
Other names: N. sp. JS614, Nocardioides, Nocardioides JS614, Nocardioides sp. JS614
Server load: low (10%) [HD]