STRINGSTRING
Noca_3562 protein (Nocardioides sp. JS614) - STRING interaction network
"Noca_3562" - Cytochrome P450 in Nocardioides sp. JS614
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Noca_3562Cytochrome P450 (451 aa)    
Predicted Functional Partners:
Noca_3561
Short chain dehydrogenase (276 aa)
 
          0.892
Noca_0831
Ferredoxin (106 aa)
     
  0.751
Noca_2948
CoA-binding domain-containing protein (899 aa)
         
  0.674
Noca_1004
N-acetyltransferase GCN5 (883 aa)
         
  0.674
Noca_2917
Short chain dehydrogenase (665 aa)
   
    0.666
Noca_3617
AMP-dependent synthetase and ligase (608 aa)
 
    0.663
Noca_3560
Major facilitator transporter (411 aa)
              0.657
Noca_3563
TetR family transcriptional regulator (203 aa)
              0.656
Noca_0635
4Fe-4S ferredoxin (544 aa)
   
   
  0.648
Noca_3113
AMP-dependent synthetase and ligase (600 aa)
 
    0.646
Your Current Organism:
Nocardioides sp. JS614
NCBI taxonomy Id: 196162
Other names: N. sp. JS614, Nocardioides, Nocardioides JS614, Nocardioides sp. JS614
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