STRINGSTRING
Noca_3654 protein (Nocardioides sp. JS614) - STRING interaction network
"Noca_3654" - Sigma-70 factor in Nocardioides sp. JS614
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Noca_3654Sigma-70 factor (172 aa)    
Predicted Functional Partners:
Noca_3655
Hypothetical protein (379 aa)
              0.859
Noca_4685
RNA polymerase sigma factor SigM (233 aa)
   
          0.712
Noca_3656
MMPL domain-containing protein (719 aa)
              0.669
Noca_3587
Sigma-70 factor (170 aa)
   
          0.661
Noca_3653
2-nitropropane dioxygenase (472 aa)
 
          0.654
Noca_0489
Sigma-70 region 2 domain-containing protein (266 aa)
   
          0.641
Noca_3652
Hypothetical protein (218 aa)
              0.583
Noca_1706
Sigma-70 region 2 domain-containing protein (217 aa)
   
          0.565
Noca_4499
Sigma-70 region 2 domain-containing protein (188 aa)
   
          0.535
Noca_3651
Alcohol dehydrogenase (365 aa)
              0.430
Your Current Organism:
Nocardioides sp. JS614
NCBI taxonomy Id: 196162
Other names: N. sp. JS614, Nocardioides, Nocardioides JS614, Nocardioides sp. JS614
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