STRINGSTRING
Noca_3686 protein (Nocardioides sp. JS614) - STRING interaction network
"Noca_3686" - Photosystem I assembly BtpA in Nocardioides sp. JS614
Nodes:
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splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Noca_3686Photosystem I assembly BtpA (272 aa)    
Predicted Functional Partners:
Noca_3685
Carbohydrate kinase (510 aa)
 
        0.945
Noca_3684
Short-chain dehydrogenase/reductase SDR (256 aa)
 
          0.870
Noca_3683
Extracellular solute-binding protein (432 aa)
 
          0.794
Noca_3687
Regulatory protein DeoR (259 aa)
              0.620
Noca_3313
Carbohydrate kinase (503 aa)
 
        0.598
Noca_3681
Binding-protein-dependent transport system inner membrane protein (305 aa)
 
          0.583
Noca_3682
Binding-protein-dependent transport systems inner membrane component (283 aa)
              0.499
Noca_3680
ABC transporter-like protein (364 aa)
              0.478
Noca_3321
DeoR family transcriptional regulator (245 aa)
   
        0.423
Noca_3182
DeoR family transcriptional regulator (255 aa)
   
        0.423
Your Current Organism:
Nocardioides sp. JS614
NCBI taxonomy Id: 196162
Other names: N. sp. JS614, Nocardioides, Nocardioides JS614, Nocardioides sp. JS614
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