STRINGSTRING
Noca_3688 protein (Nocardioides sp. JS614) - STRING interaction network
"Noca_3688" - Extracellular solute-binding protein in Nocardioides sp. JS614
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Noca_3688Extracellular solute-binding protein (466 aa)    
Predicted Functional Partners:
Noca_3586
Hypothetical protein (609 aa)
   
          0.664
Noca_4019
Metallophosphoesterase (480 aa)
   
          0.645
Noca_3689
Hypothetical protein (258 aa)
              0.620
Noca_4682
Hypothetical protein (735 aa)
   
          0.575
Noca_0188
Regulatory protein LuxR (255 aa)
   
          0.545
Noca_0128
Hypothetical protein (435 aa)
   
          0.520
Noca_3585
Hypothetical protein (422 aa)
   
          0.506
Noca_4322
Major facilitator transporter (418 aa)
   
          0.489
Noca_0189
LuxR family transcriptional regulator (340 aa)
   
          0.462
Noca_0468
Hypothetical protein (266 aa)
   
          0.461
Your Current Organism:
Nocardioides sp. JS614
NCBI taxonomy Id: 196162
Other names: N. sp. JS614, Nocardioides, Nocardioides JS614, Nocardioides sp. JS614
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