STRINGSTRING
Noca_3690 protein (Nocardioides sp. JS614) - STRING interaction network
"Noca_3690" - Hypothetical protein in Nocardioides sp. JS614
Nodes:
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splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
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Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Noca_3690Hypothetical protein (125 aa)    
Predicted Functional Partners:
Noca_3735
Hypothetical protein (209 aa)
   
        0.658
Noca_3691
Hypothetical protein (189 aa)
 
          0.577
pafA
Hypothetical protein; Catalyzes the covalent attachment of the prokaryotic ubiquitin-like protein modifier Pup to the proteasomal substrate proteins, thereby targeting them for proteasomal degradation. This tagging system is termed pupylation. The ligation reaction involves the side-chain carboxylate of the C-terminal glutamate of Pup and the side-chain amino group of a substrate lysine (453 aa)
   
          0.518
Noca_2643
Hypothetical protein (502 aa)
   
        0.505
Noca_3636
Aminoglycoside phosphotransferase (375 aa)
   
          0.492
Noca_2467
Hypothetical protein (266 aa)
   
          0.464
Noca_2016
Hypothetical protein (251 aa)
   
          0.449
Noca_0391
Limonene-1,2-epoxide hydrolase (134 aa)
   
          0.438
Noca_3692
ATP-dependent helicase HrpA (1282 aa)
              0.435
Noca_1366
Putative ABC transporter (572 aa)
   
          0.434
Your Current Organism:
Nocardioides sp. JS614
NCBI taxonomy Id: 196162
Other names: N. sp. JS614, Nocardioides, Nocardioides JS614, Nocardioides sp. JS614
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