STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Noca_3775PFAM: ABC transporter related; YHS domain protein; SMART: AAA ATPase; TRASH domain protein; KEGG: rpe:RPE_3321 ABC transporter related. (301 aa)    
Predicted Functional Partners:
Noca_0969
PFAM: protein of unknown function DUF214; KEGG: fal:FRAAL1680 hypothetical protein; putative membrane protein; putative HPr serine phosphorylation domain.
  
 
 0.997
Noca_3776
PFAM: protein of unknown function DUF214; KEGG: dvu:DVUA0023 ABC transporter, permease protein, putative.
  
 
 0.960
Noca_3777
PFAM: protein of unknown function DUF214; KEGG: bpm:BURPS1710b_A1034 ABC transporter, permease protein.
  
 
 0.960
Noca_1718
PFAM: protein of unknown function DUF214; KEGG: tte:TTE2713 ABC-type transport systems, involved in lipoprotein release, permease components.
  
 
 0.713
Noca_3779
KEGG: rha:RHA1_ro11211 hypothetical protein.
       0.705
Noca_3388
PFAM: iron permease FTR1; KEGG: sco:SCO2277 high-affinity iron transporter.
  
  
 0.696
Noca_3778
Hypothetical protein.
       0.689
Noca_2867
PFAM: protein of unknown function DUF214; KEGG: fal:FRAAL5378 putative ABC transport system integral membrane protein.
  
 
 0.671
Noca_2922
Copper-translocating P-type ATPase; KEGG: atc:AGR_C_1708 copper-transporting ATPase; TIGRFAM: ATPase, P-type (transporting), HAD superfamily, subfamily IC; copper-translocating P-type ATPase; heavy metal translocating P-type ATPase; PFAM: Haloacid dehalogenase domain protein hydrolase; YHS domain protein; E1-E2 ATPase-associated domain protein; SMART: TRASH domain protein.
 
  
 0.669
Noca_1719
PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: dra:DR2404 ABC transporter, ATP-binding protein, MsbA family.
 
   
 0.642
Your Current Organism:
Nocardioides sp. JS614
NCBI taxonomy Id: 196162
Other names: N. sp. JS614
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