STRINGSTRING
Noca_3815 protein (Nocardioides sp. JS614) - STRING interaction network
"Noca_3815" - Peptidoglycan-binding LysM in Nocardioides sp. JS614
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Noca_3815Peptidoglycan-binding LysM (118 aa)    
Predicted Functional Partners:
Noca_3816
Short-chain dehydrogenase/reductase SDR (228 aa)
              0.485
Noca_2535
Hypothetical protein (321 aa)
   
          0.478
Noca_1308
Hypothetical protein (194 aa)
   
          0.464
Noca_4290
ATPase domain-containing protein (315 aa)
   
          0.422
Noca_4224
Hypothetical protein (566 aa)
   
          0.420
Noca_3087
Hypothetical protein (461 aa)
   
          0.415
Noca_3085
Hypothetical protein (140 aa)
   
          0.405
Noca_0969
Hypothetical protein (806 aa)
   
          0.405
Your Current Organism:
Nocardioides sp. JS614
NCBI taxonomy Id: 196162
Other names: N. sp. JS614, Nocardioides, Nocardioides JS614, Nocardioides sp. JS614
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