STRINGSTRING
Noca_3818 protein (Nocardioides sp. JS614) - STRING interaction network
"Noca_3818" - Integral membrane protein in Nocardioides sp. JS614
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Noca_3818Integral membrane protein (315 aa)    
Predicted Functional Partners:
Noca_1776
Integral membrane protein (603 aa)
   
          0.769
Noca_3929
Integral membrane protein (78 aa)
   
          0.764
Noca_3931
Major facilitator transporter (449 aa)
   
          0.733
Noca_0162
SecC motif-containing protein (312 aa)
   
          0.675
lexA
LexA repressor; Represses a number of genes involved in the response to DNA damage (SOS response), including recA and lexA. In the presence of single-stranded DNA, RecA interacts with LexA causing an autocatalytic cleavage which disrupts the DNA-binding part of LexA, leading to derepression of the SOS regulon and eventually DNA repair (246 aa)
              0.657
Noca_3958
Hypothetical protein (118 aa)
   
          0.613
Noca_4674
Alanine racemase domain-containing protein (351 aa)
   
          0.578
Noca_1468
ErfK/YbiS/YcfS/YnhG family protein (234 aa)
   
          0.560
Noca_2308
Hypothetical protein (86 aa)
   
          0.481
Noca_3819
Alkaline phosphatase (523 aa)
              0.475
Your Current Organism:
Nocardioides sp. JS614
NCBI taxonomy Id: 196162
Other names: N. sp. JS614, Nocardioides, Nocardioides JS614, Nocardioides sp. JS614
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