STRINGSTRING
Noca_3978 protein (Nocardioides sp. JS614) - STRING interaction network
"Noca_3978" - Sigma-70 factor in Nocardioides sp. JS614
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Noca_3978Sigma-70 factor (174 aa)    
Predicted Functional Partners:
Noca_3977
Hypothetical protein (206 aa)
              0.859
Noca_3976
Hypothetical protein (185 aa)
              0.709
Noca_3979
C4-dicarboxylate transporter/malic acid transport protein (352 aa)
              0.625
Noca_3975
ATPase (294 aa)
              0.579
Noca_0172
Hypothetical protein (155 aa)
   
          0.517
Noca_1702
Sigma-70 region 2 domain-containing protein (466 aa)
   
          0.495
Noca_2568
Hypothetical protein (73 aa)
   
          0.465
Noca_3166
Griselysin (527 aa)
   
          0.438
Noca_2498
Hypothetical protein (173 aa)
   
          0.410
Your Current Organism:
Nocardioides sp. JS614
NCBI taxonomy Id: 196162
Other names: N. sp. JS614, Nocardioides, Nocardioides JS614, Nocardioides sp. JS614
Server load: low (13%) [HD]