STRINGSTRING
Noca_4180 protein (Nocardioides sp. JS614) - STRING interaction network
"Noca_4180" - Hypothetical protein in Nocardioides sp. JS614
Nodes:
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splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
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Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Noca_4180Hypothetical protein (417 aa)    
Predicted Functional Partners:
Noca_4182
NAD-dependent epimerase/dehydratase (317 aa)
              0.725
Noca_4181
GDP-mannose 4,6-dehydratase; Catalyzes the conversion of GDP-D-mannose to GDP-4- dehydro-6-deoxy-D-mannose (326 aa)
              0.725
Noca_4179
Hypothetical protein (67 aa)
              0.568
Noca_4178
Glycoside hydrolase 15-like protein (602 aa)
              0.568
Noca_4177
Alcohol dehydrogenase (358 aa)
              0.568
Noca_4174
FAD linked oxidase domain-containing protein (1000 aa)
              0.542
Noca_4176
Mandelate racemase/muconate lactonizing protein (376 aa)
              0.536
Noca_4175
Thiamine pyrophosphate protein (593 aa)
              0.536
Noca_4173
Short chain dehydrogenase (335 aa)
              0.536
rplW
50S ribosomal protein L23; One of the early assembly proteins it binds 23S rRNA. One of the proteins that surrounds the polypeptide exit tunnel on the outside of the ribosome. Forms the main docking site for trigger factor binding to the ribosome (101 aa)
 
 
      0.427
Your Current Organism:
Nocardioides sp. JS614
NCBI taxonomy Id: 196162
Other names: N. sp. JS614, Nocardioides, Nocardioides JS614, Nocardioides sp. JS614
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