STRINGSTRING
Noca_4184 protein (Nocardioides sp. JS614) - STRING interaction network
"Noca_4184" - Polysaccharide biosynthesis protein CapD in Nocardioides sp. JS614
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Noca_4184Polysaccharide biosynthesis protein CapD (610 aa)    
Predicted Functional Partners:
Noca_4185
Lipopolysaccharide biosynthesis protein (473 aa)
 
   
  0.950
Noca_4220
DegT/DnrJ/EryC1/StrS aminotransferase (369 aa)
 
 
  0.917
Noca_1028
DegT/DnrJ/EryC1/StrS aminotransferase (269 aa)
 
 
  0.899
Noca_4210
DegT/DnrJ/EryC1/StrS aminotransferase (362 aa)
 
 
  0.875
Noca_4219
Sugar transferase (195 aa)
 
   
  0.819
Noca_2993
NAD-dependent epimerase/dehydratase (346 aa)
 
 
  0.791
Noca_4217
Group 1 glycosyl transferase (418 aa)
 
   
  0.769
Noca_3523
NAD-dependent epimerase/dehydratase (277 aa)
 
 
  0.755
Noca_3713
NAD-dependent epimerase/dehydratase (306 aa)
   
 
  0.721
Noca_3305
NAD-dependent epimerase/dehydratase (314 aa)
   
 
  0.721
Your Current Organism:
Nocardioides sp. JS614
NCBI taxonomy Id: 196162
Other names: N. sp. JS614, Nocardioides, Nocardioides JS614, Nocardioides sp. JS614
Server load: low (13%) [HD]