STRINGSTRING
Noca_4222 protein (Nocardioides sp. JS614) - STRING interaction network
"Noca_4222" - Transketolase in Nocardioides sp. JS614
Nodes:
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splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
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Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Noca_4222Transketolase (270 aa)    
Predicted Functional Partners:
Noca_4221
Transketolase subunit B (307 aa)
 
  0.999
Noca_2446
Ribulose-phosphate 3-epimerase (220 aa)
   
  0.998
Noca_3483
Ribose-5-phosphate isomerase B (162 aa)
 
   
  0.980
tal
Transaldolase; Transaldolase is important for the balance of metabolites in the pentose-phosphate pathway (370 aa)
     
  0.978
Noca_1175
Transaldolase (371 aa)
 
   
  0.972
Noca_2530
Glyceraldehyde-3-phosphate dehydrogenase (331 aa)
       
    0.946
Noca_4350
Fructose-bisphosphate aldolase (343 aa)
       
    0.944
Noca_3397
Xylulokinase (465 aa)
         
    0.944
Noca_1066
Fructose 1,6-bisphosphatase II (339 aa)
 
     
    0.944
Noca_2539
Glucose-6-phosphate isomerase (555 aa)
       
  0.943
Your Current Organism:
Nocardioides sp. JS614
NCBI taxonomy Id: 196162
Other names: N. sp. JS614, Nocardioides, Nocardioides JS614, Nocardioides sp. JS614
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