STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Noca_4223KEGG: sma:SAV951 dTDP-6-deoxy-L-hexose 3-O-methyltransferase. (273 aa)    
Predicted Functional Partners:
Noca_4222
PFAM: Transketolase domain protein; KEGG: tma:TM0954 transketolase, N-terminal subunit.
 
     0.820
Noca_4221
Transketolase subunit B; PFAM: Transketolase, central region; Transketolase domain protein; KEGG: lmf:LMOf2365_1054 transketolase, C-terminal subunit, putative.
       0.784
Noca_4220
PFAM: aminotransferase, class V; DegT/DnrJ/EryC1/StrS aminotransferase; KEGG: gka:GK3168 pleiotropic regulatory protein; Belongs to the DegT/DnrJ/EryC1 family.
       0.783
Noca_4218
PFAM: Methyltransferase type 11; Methyltransferase type 12; KEGG: mmc:Mmcs_1869 methyltransferase type 11.
     
 0.645
Noca_4217
PFAM: glycosyl transferase, group 1; KEGG: cvi:CV4119 probable glycosyltransferase.
  
    0.644
Noca_4219
PFAM: sugar transferase; KEGG: bth:BT0611 glycosyltransferase.
       0.638
Noca_4224
KEGG: mmc:Mmcs_0947 hypothetical protein.
  
   0.597
Noca_1656
Aminotransferase; PFAM: class II aldolase/adducin family protein; aminotransferase class-III; KEGG: psp:PSPPH_2738 glutamate-1-semialdehyde aminotransferase.
 
   
 0.509
Noca_4216
Methyltransferase type 11; PFAM: UbiE/COQ5 methyltransferase; Methyltransferase type 11; Methyltransferase type 12; KEGG: ter:Tery_2252 methyltransferase type 11.
     
 0.497
Your Current Organism:
Nocardioides sp. JS614
NCBI taxonomy Id: 196162
Other names: N. sp. JS614
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.