STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Noca_4310KEGG: cps:CPS_4816 hypothetical protein. (920 aa)    
Predicted Functional Partners:
Noca_0057
KEGG: afm:Afu5g00510 hypothetical protein.
 
     0.655
Noca_4185
PFAM: lipopolysaccharide biosynthesis; KEGG: fal:FRAAL5660 putative tyrosine-protein kinase.
  
    0.594
Noca_4311
KEGG: cya:CYA_2836 sensory box histidine kinase/response regulator; TIGRFAM: PAS sensor protein; PFAM: response regulator receiver; ATP-binding region, ATPase domain protein domain protein; histidine kinase A domain protein domain protein; Hpt domain protein; PAS fold-3 domain protein; PAS fold-4 domain protein; PAS fold domain protein; SMART: PAS domain containing protein; PAC repeat-containing protein.
       0.565
Noca_4312
Hypothetical protein.
       0.565
Noca_1086
PFAM: type III restriction enzyme, res subunit; KEGG: pac:PPA1612 putative type III restriction enzyme.
   
    0.547
Noca_1291
PFAM: type III restriction enzyme, res subunit; DEAD/DEAH box helicase domain protein; SMART: DEAD-like helicases-like; KEGG: sma:SAV5140 protein involving differentiation.
   
    0.547
Noca_2280
PFAM: helicase domain protein; type III restriction enzyme, res subunit; restriction endonuclease; DEAD/DEAH box helicase domain protein; SMART: DEAD-like helicases-like; KEGG: sus:Acid_1698 type III restriction enzyme, res subunit.
   
    0.547
Noca_2754
Hypothetical protein; KEGG: rpa:RPA2214 possible helicase.
   
    0.547
Noca_3809
PFAM: helicase domain protein; type III restriction enzyme, res subunit; DEAD/DEAH box helicase domain protein; SMART: DEAD-like helicases-like; KEGG: sco:SCO2863 helicase.
   
    0.547
Noca_3947
PFAM: helicase domain protein; type III restriction enzyme, res subunit; DEAD/DEAH box helicase domain protein; SMART: DEAD-like helicases-like; KEGG: sma:SAV3912 ATP-dependent DNA helicase.
   
    0.547
Your Current Organism:
Nocardioides sp. JS614
NCBI taxonomy Id: 196162
Other names: N. sp. JS614
Server load: low (36%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.