STRINGSTRING
Noca_4346 protein (Nocardioides sp. JS614) - STRING interaction network
"Noca_4346" - Helix-turn-helix, type 11 domain-containing protein in Nocardioides sp. JS614
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Noca_4346Helix-turn-helix, type 11 domain-containing protein (330 aa)    
Predicted Functional Partners:
Noca_4321
ArsR family transcriptional regulator (200 aa)
   
          0.763
Noca_0914
Hypothetical protein (150 aa)
   
          0.663
Noca_4290
ATPase domain-containing protein (315 aa)
   
          0.654
Noca_3755
Hypothetical protein (451 aa)
   
          0.653
Noca_2037
Hypothetical protein (154 aa)
   
          0.643
Noca_1196
Hypothetical protein (174 aa)
   
          0.624
Noca_1451
Type 11 methyltransferase (523 aa)
   
          0.620
Noca_0488
Hypothetical protein (384 aa)
   
          0.615
Noca_0307
Hypothetical protein (451 aa)
   
          0.604
Noca_1454
Hypothetical protein (473 aa)
   
          0.603
Your Current Organism:
Nocardioides sp. JS614
NCBI taxonomy Id: 196162
Other names: N. sp. JS614, Nocardioides, Nocardioides JS614, Nocardioides sp. JS614
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