STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Noca_4404PFAM: 4Fe-4S ferredoxin, iron-sulfur binding domain protein; protein of unknown function DUF224, cysteine-rich region domain protein; KEGG: mpa:MAP3831c hypothetical protein. (1033 aa)    
Predicted Functional Partners:
Noca_1816
PFAM: electron transfer flavoprotein beta-subunit; electron transfer flavoprotein, alpha subunit; KEGG: sco:SCO1081 putative electron transfer flavoprotein, alpha subunit.
 
  
 0.560
Noca_0639
PFAM: electron transfer flavoprotein beta-subunit; electron transfer flavoprotein, alpha subunit; KEGG: sco:SCO1081 putative electron transfer flavoprotein, alpha subunit.
 
  
 0.557
Noca_4403
Hypothetical protein; KEGG: mxa:MXAN_3638 peptidase, M19 family.
  
    0.524
Noca_0640
PFAM: electron transfer flavoprotein beta-subunit; KEGG: sco:SCO1082 putative electron transfer flavoprotein, beta subunit.
 
  
 0.520
Noca_1815
PFAM: electron transfer flavoprotein beta-subunit; KEGG: sco:SCO1082 putative electron transfer flavoprotein, beta subunit.
 
  
 0.510
Noca_3553
TIGRFAM: succinate dehydrogenase and fumarate reductase iron-sulfur protein; PFAM: 4Fe-4S ferredoxin, iron-sulfur binding domain protein; KEGG: tfu:Tfu_2451 putative succinate dehydrogenase iron-sulfur protein; Belongs to the succinate dehydrogenase/fumarate reductase iron-sulfur protein family.
  
 
 0.497
Noca_4429
PFAM: acyl-CoA dehydrogenase domain protein; KEGG: sma:SAV4390 putative acyl-CoA dehydrogenase.
 
  
 0.470
Noca_4405
Hypothetical protein.
       0.466
Noca_2933
PFAM: 4Fe-4S ferredoxin, iron-sulfur binding domain protein; Polysulphide reductase, NrfD; KEGG: rha:RHA1_ro11226 probable polysulphide reductase.
  
  
 0.440
Noca_2530
KEGG: cdi:DIP1310 glyceraldehyde-3-phosphate dehydrogenase; TIGRFAM: glyceraldehyde-3-phosphate dehydrogenase, type I; PFAM: glyceraldehyde 3-phosphate dehydrogenase; Belongs to the glyceraldehyde-3-phosphate dehydrogenase family.
   
  
 0.410
Your Current Organism:
Nocardioides sp. JS614
NCBI taxonomy Id: 196162
Other names: N. sp. JS614
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