STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Noca_4478PFAM: major facilitator superfamily MFS_1; KEGG: dar:Daro_1096 major facilitator superfamily MFS_1. (398 aa)    
Predicted Functional Partners:
Noca_4477
KEGG: pol:Bpro_0362 extracellular solute-binding protein, family 3.
 
   
 0.927
Noca_4479
Transcriptional regulator, LacI family; PFAM: regulatory protein, LacI; periplasmic binding protein/LacI transcriptional regulator; KEGG: reu:Reut_B5848 periplasmic binding protein/LacI transcriptional regulator.
 
   
 0.819
Noca_4476
PFAM: protein of unknown function DUF1100, hydrolase family protein; KEGG: bcn:Bcen_5609 hypothetical protein; Belongs to the UPF0255 family.
 
    0.800
Noca_4475
PFAM: NADP oxidoreductase, coenzyme F420-dependent; 6-phosphogluconate dehydrogenase, NAD-binding; KEGG: pae:PA2199 probable dehydrogenase.
 
     0.690
Noca_4474
PFAM: peptidase M24; KEGG: hma:rrnB0212 aminopeptidase.
 
   
 0.660
Noca_4473
PFAM: aldehyde dehydrogenase; KEGG: rpc:RPC_0104 succinate-semialdehyde dehydrogenase (NAD(P)+); Belongs to the aldehyde dehydrogenase family.
  
    0.497
Noca_4441
PFAM: inner-membrane translocator; ABC transporter related; KEGG: bme:BMEII0874 high-affinity branched-chain amino acid transport system permease protein LivH / high-affinity branched-chain amino acid transport ATP-binding protein LivG; TC 3.A.1.4.-; TC 3.A.1.4.-.
  
     0.457
Your Current Organism:
Nocardioides sp. JS614
NCBI taxonomy Id: 196162
Other names: N. sp. JS614
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.