STRINGSTRING
Noca_4566 protein (Nocardioides sp. JS614) - STRING interaction network
"Noca_4566" - Abortive infection protein in Nocardioides sp. JS614
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Noca_4566Abortive infection protein (233 aa)    
Predicted Functional Partners:
Noca_3635
Hypothetical protein (373 aa)
   
          0.739
Noca_3720
Hypothetical protein (225 aa)
   
          0.707
Noca_4152
Hypothetical protein (201 aa)
   
          0.698
Noca_4567
DEAD/DEAH box helicase domain-containing protein (507 aa)
   
   
  0.643
Noca_0302
Hypothetical protein (163 aa)
   
          0.602
Noca_3125
Hypothetical protein (77 aa)
   
          0.582
Noca_3636
Aminoglycoside phosphotransferase (375 aa)
   
          0.569
Noca_2535
Hypothetical protein (321 aa)
   
          0.564
Noca_2729
acyl-CoA synthetase (559 aa)
 
          0.551
Noca_2229
Peptidoglycan-binding LysM (1086 aa)
   
          0.544
Your Current Organism:
Nocardioides sp. JS614
NCBI taxonomy Id: 196162
Other names: N. sp. JS614, Nocardioides, Nocardioides JS614, Nocardioides sp. JS614
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