STRINGSTRING
Noca_4578 protein (Nocardioides sp. JS614) - STRING interaction network
"Noca_4578" - Class I and II aminotransferase in Nocardioides sp. JS614
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Noca_4578Class I and II aminotransferase (386 aa)    
Predicted Functional Partners:
Noca_4577
2,4-dienoyl-CoA reductase (668 aa)
              0.839
Noca_4576
PadR family transcriptional regulator (181 aa)
              0.834
Noca_0976
Cystathionine gamma-lyase (387 aa)
       
  0.810
Noca_2631
B12-dependent methionine synthase (1244 aa)
         
  0.742
Noca_3943
Cystathionine gamma-synthase (382 aa)
       
  0.730
Noca_3292
Cys/Met metabolism pyridoxal-phosphate-dependent protein (359 aa)
       
  0.730
Noca_4575
Extracellular solute-binding protein (297 aa)
              0.620
Noca_4579
UDP-glucose 6-dehydrogenase (440 aa)
              0.602
Noca_3629
O-acetylhomoserine/O-acetylserine sulfhydrylase (428 aa)
       
  0.592
mdh
Malate dehydrogenase; Catalyzes the reversible oxidation of malate to oxaloacetate (328 aa)
       
    0.474
Your Current Organism:
Nocardioides sp. JS614
NCBI taxonomy Id: 196162
Other names: N. sp. JS614, Nocardioides, Nocardioides JS614, Nocardioides sp. JS614
Server load: low (8%) [HD]