STRINGSTRING
Noca_4600 protein (Nocardioides sp. JS614) - STRING interaction network
"Noca_4600" - Penicillin-binding protein, transpeptidase in Nocardioides sp. JS614
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Noca_4600Penicillin-binding protein, transpeptidase (639 aa)    
Predicted Functional Partners:
ftsQ
Cell division protein FtsQ; Essential cell division protein (248 aa)
   
 
  0.895
Noca_4676
Glycosyl transferase family protein (778 aa)
 
  0.877
Noca_3461
Rod shape-determining protein RodA (413 aa)
 
  0.877
Noca_3064
Cell division protein FtsW (417 aa)
 
  0.866
Noca_3465
Rod shape-determining protein MreB (342 aa)
 
 
  0.864
Noca_0326
Glycosyl transferase family protein (807 aa)
 
  0.862
Noca_0025
Cell cycle protein (468 aa)
   
  0.847
Noca_0197
Alpha amylase catalytic subunit (925 aa)
 
 
 
  0.830
tig
Trigger factor; Involved in protein export. Acts as a chaperone by maintaining the newly synthesized protein in an open conformation. Functions as a peptidyl-prolyl cis-trans isomerase (471 aa)
     
      0.769
rplW
50S ribosomal protein L23; One of the early assembly proteins it binds 23S rRNA. One of the proteins that surrounds the polypeptide exit tunnel on the outside of the ribosome. Forms the main docking site for trigger factor binding to the ribosome (101 aa)
     
 
  0.768
Your Current Organism:
Nocardioides sp. JS614
NCBI taxonomy Id: 196162
Other names: N. sp. JS614, Nocardioides, Nocardioides JS614, Nocardioides sp. JS614
Server load: low (6%) [HD]