STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Noca_4613PFAM: peptidase M3A and M3B, thimet/oligopeptidase F; KEGG: ade:Adeh_0397 thimet oligopeptidase. (641 aa)    
Predicted Functional Partners:
gltX
glutamyl-tRNA synthetase; Catalyzes the attachment of glutamate to tRNA(Glu) in a two- step reaction: glutamate is first activated by ATP to form Glu-AMP and then transferred to the acceptor end of tRNA(Glu).
   
  
 0.650
Noca_4614
RNA polymerase, sigma subunit, ECF family; PFAM: sigma-70 region 2 domain protein; Tetratricopeptide TPR_2 repeat protein; Sigma-70, region 4 type 2; KEGG: sma:SAV1195 putative RNA polymerase ECF-subfamily sigma factor.
       0.590
Noca_4615
KEGG: sco:SCO4674 hypothetical protein.
 
    0.506
Noca_3344
KEGG: bcn:Bcen_5567 hypothetical protein.
 
     0.482
Noca_2467
PFAM: protein of unknown function DUF1503; KEGG: tfu:Tfu_2998 hypothetical protein.
 
     0.460
Noca_4611
PFAM: protein of unknown function DUF1707; KEGG: tfu:Tfu_2623 hypothetical protein.
       0.455
Noca_4612
PFAM: transcriptional regulator PadR family protein; KEGG: nfa:nfa36110 putative transcriptional regulator.
       0.445
Noca_1299
PFAM: metallophosphoesterase; 5'-Nucleotidase domain protein; KEGG: sco:SCO2015 putative nucleotidase; Belongs to the 5'-nucleotidase family.
 
  
 0.407
Noca_1364
Xaa-Pro aminopeptidase; PFAM: peptidase M24; peptidase M24B, X-Pro dipeptidase/aminopeptidase domain protein; KEGG: tfu:Tfu_1744 Xaa-Pro aminopeptidase; Belongs to the peptidase M24B family.
 
 
 
 0.406
Noca_4616
KEGG: mmc:Mmcs_1143 hypothetical protein.
  
    0.406
Your Current Organism:
Nocardioides sp. JS614
NCBI taxonomy Id: 196162
Other names: N. sp. JS614
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