STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Noca_4630PFAM: glycoside hydrolase, family 31; KEGG: lmo:lmo0182 hypothetical protein; Belongs to the glycosyl hydrolase 31 family. (744 aa)    
Predicted Functional Partners:
Noca_4631
PFAM: glycoside hydrolase 15-related; KEGG: xac:XAC4082 hypothetical protein.
 
  
 0.955
Noca_4632
PFAM: extracellular solute-binding protein, family 1; KEGG: lmo:lmo0181 similar to sugar ABC transporter, sugar-binding protein; TC 3.A.1.1.-.
 
  
 0.905
Noca_4629
Hypothetical protein.
       0.773
Noca_4634
Carbohydrate ABC transporter membrane protein 1, CUT1 family; PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: lin:lin0218 similar to sugar ABC transporters, permease proteins; TC 3.A.1.1.-.
 
     0.651
Noca_4635
PFAM: ROK family protein; KEGG: sma:SAV1081 ROK-family transcriptional regulator.
 
  
 0.622
Noca_4633
Carbohydrate ABC transporter membrane protein 2, CUT1 family; PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: lmf:LMOf2365_0191 sugar ABC transporter, permease protein; TC 3.A.1.1.-.
 
  
 0.601
Noca_0041
Carbohydrate ABC transporter substrate-binding protein, CUT1 family; PFAM: extracellular solute-binding protein, family 1; KEGG: mes:Meso_4520 extracellular solute-binding protein, family 1; TC 3.A.1.1.-.
 
  
 0.473
Noca_3211
KEGG: nfa:nfa6110 hypothetical protein.
  
     0.443
Noca_2607
TIGRFAM: galactokinase; PFAM: GHMP kinase; GHMP kinase, C terminal domain protein; KEGG: rha:RHA1_ro05490 galactokinase; Belongs to the GHMP kinase family. GalK subfamily.
 
  
 0.438
Noca_3737
KEGG: mpa:MAP3097 hypothetical protein.
  
     0.414
Your Current Organism:
Nocardioides sp. JS614
NCBI taxonomy Id: 196162
Other names: N. sp. JS614
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