STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Cgl0483PUTATIVE DEHYDROGENASE. (471 aa)    
Predicted Functional Partners:
Cgl1036
Short chain dehydrogenase.
      
 0.981
dkgA
2,5-DIKETO-D-GLUCONIC ACID REDUCTASE.
   
  
 0.981
dkg
2,5-DIKETO-D-GLUCONIC ACID REDUCTASE.
   
  
 0.976
adhC
ALCOHOL DEHYDROGENASE, CLASS C.
      
 0.797
Cgl0484
Hypothetical protein.
       0.770
Cgl0482
CATION-TRANSPORTING ATPASE.
  
    0.729
Cgl0481
Permease for amino acids and related compounds, fa.
       0.481
crtB2
PHYTOENE SYNTHETASE.
  
  
 0.464
crtB
PHYTOENE SYNTHETASE.
  
  
 0.464
gabT
PROBABLE 4-AMINOBUTYRATE AMINOTRANSFERASE PROTEIN; Belongs to the class-III pyridoxal-phosphate-dependent aminotransferase family.
  
    0.418
Your Current Organism:
Corynebacterium glutamicum
NCBI taxonomy Id: 196627
Other names: C. glutamicum ATCC 13032, Corynebacterium glutamicum ATCC 13032, Corynebacterium glutamicum str. ATCC 13032, Corynebacterium glutamicum strain ATCC 13032
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