Export your current network:
... as a bitmap image:
file format is 'PNG': portable network graphic
... as a high-resolution bitmap:
same PNG format, but at higher resolution
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of protiens in your network
Browse interactions in tabular form:
node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
Cgl0490 | Cgl0491 | cg0578 | cg0579 | Putative membrane protein. | Transcriptional regulator. | 0.755 |
Cgl0490 | rpoC | cg0578 | cg0577 | Putative membrane protein. | DNA-DIRECTED RNA POLYMERASE BETA' CHAIN; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. | 0.458 |
Cgl0491 | Cgl0490 | cg0579 | cg0578 | Transcriptional regulator. | Putative membrane protein. | 0.755 |
Cgl0491 | Cgl1234 | cg0579 | cg1391 | Transcriptional regulator. | Uncharacterized protein related to capsule biosynthesis enzymes. | 0.449 |
Cgl0491 | Cgl2979 | cg0579 | cg3303 | Transcriptional regulator. | Transcriptional regulator PadR-like family. | 0.422 |
Cgl0491 | rpoC | cg0579 | cg0577 | Transcriptional regulator. | DNA-DIRECTED RNA POLYMERASE BETA' CHAIN; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. | 0.447 |
Cgl1234 | Cgl0491 | cg1391 | cg0579 | Uncharacterized protein related to capsule biosynthesis enzymes. | Transcriptional regulator. | 0.449 |
Cgl2979 | Cgl0491 | cg3303 | cg0579 | Transcriptional regulator PadR-like family. | Transcriptional regulator. | 0.422 |
rpoC | Cgl0490 | cg0577 | cg0578 | DNA-DIRECTED RNA POLYMERASE BETA' CHAIN; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. | Putative membrane protein. | 0.458 |
rpoC | Cgl0491 | cg0577 | cg0579 | DNA-DIRECTED RNA POLYMERASE BETA' CHAIN; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. | Transcriptional regulator. | 0.447 |