STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Cgl1237Putative spermidine synthase. (314 aa)    
Predicted Functional Partners:
Cgl1238
Conserved hypothetical protein.
  
    0.718
Cgl2864
Tellurite resistance protein or related permease.
 
    0.623
Cgl1241
Conserved hypothetical protein.
 
  
 0.592
mnmA
TRNA-METHYLTRANSFERASE; Catalyzes the 2-thiolation of uridine at the wobble position (U34) of tRNA, leading to the formation of s(2)U34.
       0.508
uspA3
UNIVERSAL STRESS PROTEIN FAMILY.
 
    
 0.470
Cgl1239
Hypothetical protein predicted by Glimmer/Critica.
  
    0.432
putA
PROLINE DEHYDROGENASE/DELTA-1-PYRROLINE-5-CARBOXYLATE DEHYDROGENASE.
 
 
 0.427
Cgl1373
Superfamily I DNA or RNA helicase.
 
     0.416
Your Current Organism:
Corynebacterium glutamicum
NCBI taxonomy Id: 196627
Other names: C. glutamicum ATCC 13032, Corynebacterium glutamicum ATCC 13032, Corynebacterium glutamicum str. ATCC 13032, Corynebacterium glutamicum strain ATCC 13032
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